PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000315095
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HB-other
Protein Properties Length: 531aa    MW: 59422.8 Da    PI: 9.4469
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000315095genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.12.2e-061474755
                   --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
       Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                   f +++++e+e+  ++  n  ps+e     A+k            ++ +qV +WFqNrR+  
  MDP0000315095 14 FVQSEVTEMEAILQQynNTMPSREVLMAVADKFsesperkgkiTVQMKQVWNWFQNRRYAI 74
                   6677788888888866588999999999999999999999988999************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.411377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-51379IPR009057Homeodomain-like
SuperFamilySSF466893.51E-91378IPR009057Homeodomain-like
PfamPF167196.3E-40130256IPR032001SAWADEE domain
SuperFamilySSF501293.71E-22382433IPR011032GroES-like
Gene3DG3DSA:3.90.180.102.2E-26384529IPR011032GroES-like
PfamPF082409.9E-5450499IPR013154Alcohol dehydrogenase, N-terminal
SuperFamilySSF501293.71E-22465529IPR011032GroES-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MGRPPSNGGP TFRFVQSEVT EMEAILQQYN NTMPSREVLM AVADKFSESP ERKGKITVQM  60
KQVWNWFQNR RYAIRAKSSK VLGKLDXSPM SRDDSAAARN VPQGPQQIAA PVHVPSVPGS  120
GKGASENAIF EFEAKSGRDG AWYDVANFLS HKNLETVNPE VLVRFAGFGP EEDEWVNVRK  180
HVRQRSLPCE SSECVAVLPG DLILCFQEGK EQALYFDAHV LDAQRRRHDV RGCRCRFLVR  240
YVHDQSEEIV PLRKVCRRPE TDYRLQQLHA VNEAISAEQK SMEQYMASAT SGEMMQKQQN  300
AVPPTFYVTA SLPTQTTTPE LRRSEISTVV RSGNSSAPLS SSTLLGFDLK ATMRILRPRS  360
FRASVSESNH HLKVRFRRFV TSCRAVVLPR FGGPEVLELR PVVQVPDLKP HEVLVRARAV  420
SINPLDTRPR DDLSAXIXTH IEFFVFIFVX RLRLQMRSGY GRSIFGPHLP LILGRDISGD  480
VAAVGDSVRG LSVGQEVFGA LHPTAVRGTY ADYAILSEEE LAPKPTSVTH V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuv_A7e-431272601134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-431272601134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-431272601134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-431272601134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-431272601134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_A7e-431272601134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-431272601134SHH1 SAWADEE
4iur_B7e-431272601134SHH1 SAWADEE
4iuq_A7e-431272601134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-431272601134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.256284e-34fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008345094.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
SwissprotQ8RWJ71e-142SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLM5WG160.0M5WG16_PRUPE; Uncharacterized protein
STRINGGLYMA06G35561.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-130sequence-specific DNA binding transcription factors;sequence-specific DNA binding